run_metadata: 38377
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38377 | SRR1797747 | SRX872337 | SRS842650 | SRP053641 | PRJNA275178 | Danio rerio Transcriptome or Gene expression | PRJNA275178 | Other | To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH | 72h liver | 72h3 | strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h3|BioSampleModel:Model organism or animal | dataset of 72h3 | 72h3 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina Genome Analyzer IIx | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP053641 | 72h3_R2.fastq.gz 72h3_R1.fastq.gz | fastq fastq | 2933514432.0 | 20371628.0 | 72h3 run1 | 0:72 1:72 | A:797742153;C:682061705;G:766687384;T:683472770;N:3550420 | 72 | 72 | 797742153 | 682061705 | 766687384 | 683472770 | 3550420 | SRX872337 | SRS842650 | SRA237656 | Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.92802 | 0.91291 | 0.04028 | 0.03941 | 0.80823 | 0.8058 | 0.38547 | 0.38408 | 72 | 72 | B | B | biological fallback assumption | illumina | early_illumina | unknown | other | unknown | bulk | unknown | unknown | China | 2015-02-11 | Adult | Adult | Liver | Liver and Biliary System |