run_metadata: 38362
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38362 | SRR1791572 | SRX866242 | SRS837301 | SRP053216 | PRJNA274605 | Danio rerio Transcriptome or Gene expression | PRJNA274605 | Transcriptome Analysis | Groups of adult zebrafish 9 male and 9 female were exposed for 7 days ttwo xxx ng/L 168.7 pmol/L of 17a ethinylestradiol EE2. Transcriptome response of EE2 in zebrafish liver were analysed. | Groups of adult zebrafish 9 female were exposed for 7 days to DMSO. Transcriptome response of DMSO in zebrafish liver were analysed. | Control Female | breed:zebrafihs|age:adult|sex:female|tissue:Liver|BioSampleModel:Model organism or animal | Transcriptome response of EE2 in zebrafish | Control Female | Control Female | Library Construction: Illumina HiSeq 2000 protolcol. Experimental design: Adult zebrafish and juvenile crucian carp Carassius auratus were bred and maintained in 10 L glass aquaria operating with a 14:10 h light:dark cycle at 23–26°C in the laboratory. Fish were acclimated for 1 week prior to use and fed with Tubifex worms once per day. Groups of adult zebrafish 9 male and 9 female were exposed for 7 days ttwo xxx ng/L 168.7 pmol/L of 17α ethinylestradiol EE2; TCI chemicals Tokyo Japan which had been diluted from a concentrated stock solution solubilized in dimethyl sulfoxide DMSO; Sigma Aldrich St. Louis MO USA. DMSO only was added to the water in control group tanks. Transcriptome response of EE2 in zebrafish liver were analysed. | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>180</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>91</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP053216 | Control_Female_L1_2.fq.gz Control_Female_L1_1.fq.gz | fastq fastq | 4616088120.0 | 25644934.0 | Control Female | 0:90 1:90 | A:1224454560;C:1067759750;G:1107547943;T:1216252836;N:73031 | 90 | 90 | 1224454560 | 1067759750 | 1107547943 | 1216252836 | 73031 | SRX866242 | SRS837301 | SRA236477 | Yangtze River Fisheries Research Institute|Fisheries resources and environment | Institute of hydrobiology Chinese academy of sciences | 2 | 0.95027 | 0.95039 | 0.02174 | 0.02234 | 0.86387 | 0.86574 | 0.19491 | 0.19962 | 90 | 90 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2015-02-06 | Adult | Adult | Liver | Liver and Biliary System |