run_metadata: 38361

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
38361	SRR1791573	SRX866243	SRS837302	SRP053216	PRJNA274605	Danio rerio Transcriptome or Gene expression	PRJNA274605	Transcriptome Analysis	Groups of adult zebrafish 9 male and 9 female were exposed for 7 days ttwo xxx ng/L 168.7 pmol/L of 17a ethinylestradiol EE2. Transcriptome response of EE2 in zebrafish liver were analysed.			Groups of adult zebrafish 9 male were exposed for 7 days to DMSO. Transcriptome response of DMSO in zebrafish liver were analysed.		Control Male		breed:zebrafish\|age:adult\|sex:male\|tissue:Liver\|BioSampleModel:Model organism or animal									Transcriptome response of EE2 in zebrafish	Control Male	Control Male	Library Construction: Illumina HiSeq 2000 protolcol. Experimental design: Adult zebrafish and juvenile crucian carp Carassius auratus were bred and maintained in 10 L glass aquaria operating with a 14:10 h light:dark cycle at 23–26°C in the laboratory. Fish were acclimated for 1 week prior to use and fed with Tubifex worms once per day. Groups of adult zebrafish 9 male and 9 female were exposed for 7 days ttwo xxx ng/L 168.7 pmol/L of 17α ethinylestradiol EE2; TCI chemicals Tokyo Japan which had been diluted from a concentrated stock solution solubilized in dimethyl sulfoxide DMSO; Sigma Aldrich St. Louis MO USA. DMSO only was added to the water in control group tanks. Transcriptome response of EE2 in zebrafish liver were analysed.			RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>180</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>91</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP053216			Control_Male_L1_1.fq.gz Control_Male_L1_2.fq.gz	fastq fastq	4630623300.0	25725685.0	Control Male	0:90 1:90	A:1239458137;C:1044072167;G:1102275499;T:1244745295;N:72202	90	90			1239458137	1044072167	1102275499	1244745295	72202	SRX866243	SRS837302	SRA236477	Yangtze River Fisheries Research Institute\|Fisheries resources and environment	Institute of hydrobiology Chinese academy of sciences	2	0.92771	0.92723	0.05741	0.05779	0.80318	0.80574	0.62063	0.61561	90	90	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown		China	2016-02-05	Adult	Adult	Liver	Liver and Biliary System