run_metadata: 3759
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3759 | ERR1294279 | ERX1365625 | ERS1067820 | ERP014370 | PRJEB12848 | Danio rerio Mau mutants skin Transcriptome | ena-STUDY-MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY-25-02-2016-18:42:00:594-265 | Other | Mau/Aqp3a dominant mutants of zebrafish Danio rerio are characterized by broken stripes and short fins. To identify signaling pathways affected by mau mutations and leading to pigment patterning defects we analyze skin transcriptome of adult wild type TU fish and two mau alleles. | ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2016 02 25 | Mau tVBU1/tVBU1 skin transcriptome | SAMEA3880686 | MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY | ENA first public:2016 05 24|ENA last update:2016 02 25|External Id:SAMEA3880686|INSDC center alias:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC center name:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|INSDC first public:2016 05 24T17:02:01Z|INSDC last update:2016 02 25T18:42:06Z|INSDC status:public|Submitter Id:VBU1|allele:mau tVBU1/tVBU1|common name:zebrafish|dev stage:adult|sample name:VBU1|tissue type:skin | Illumina HiSeq 2000 sequencing | ena EXPERIMENT MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 9 | vbu13 | 1 | Illumina TruSeq RNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina HiSeq 2000 | ERP014370 | Illumina HiSeq 2000 sequencing | ENA FIRST PUBLIC:2016 05 24|ENA LAST UPDATE:2018 11 16 | vbu13_GCCAAT_L008_R1_001.fastq.gz | fastq | 2376143675.0 | 23526175.0 | ena RUN MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY 25 02 2016 18:41:58:670 9 | 0:101 | A:655940769;C:534990399;G:527934646;T:655773043;N:1504818 | 101 | 655940769 | 534990399 | 527934646 | 655773043 | 1504818 | ERX1365625 | ERS1067820 | ERA567249 | MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY|European Nucleotide Archive | MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY | 1 | 0.95443 | 0.10666 | 0.73176 | 0.50978 | 101 | B | usable mapping rate | illumina | hiseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | Germany | 2016-02-25 | Adult | Adult | Skin | Surface Structure |