run_metadata: 3749
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3749 | ERR1397041 | ERX1468300 | ERS1023447 | ERP013838 | PRJEB12367 | Transcriptome profiling of zebrafish muscle from wild type and tert knockout adults | Transcriptome_profiling_of_zebrafish_muscle_from_wild_type_and_tert_knockout_adults-sc-4036 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from RNA of dissected muscle from wildtype and tert homozygous adult zebrafish for transcriptional profiling | ArrayExpress:E ERAD 456 | ZMP phentoype 112 1 10 | SAMEA3716298 | Wellcome Sanger Institute | ArrayExpress DevelopmentalStage:Adult ZFS:0000044 3 month|ArrayExpress OrganismPart:Adult muscle|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 17|External Id:SAMEA3716298|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:23:28Z|INSDC last update:2015 12 17T16:32:22Z|INSDC status:public|Submitter Id:219e5cd0 a400 11e5 8adb 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a 3 mpf wild type adult zebrafish muscle tissue dissected from the region between the anal fin and the caudal fin plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph112|sample name:219e5cd0 a400 11e5 8adb 68b59976a382|strain:mixed | Illumina HiSeq 2000 paired end sequencing | SC EXP 18715 8#10 | 15566350 | Illumina sequencing of library 15566350 constructed from sample accession ERS1023447 for study accession ERP013838. This is part of an Illumina multiplexed sequencing run 18715 8. This submission includes reads tagged with the sequence TAGCTTGT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP013838 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 | 18715_8#10.cram | cram | 512021380.0 | 3938626.0 | SC RUN 18715 8#10 | 0:55 1:75 | A:134633141;C:95267180;G:96292177;T:185827489;N:1393 | 55 | 75 | 134633141 | 95267180 | 96292177 | 185827489 | 1393 | ERX1468300 | ERS1023447 | ERA612387 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.27511 | 0.8473 | 0.08789 | 0.07504 | 0.97484 | 0.91932 | 0.83725 | 0.53104 | 55 | 75 | T | B | mate1 technical by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2015-12-17 | Adult | Adult | Multi-tissue | Multi-system |