run_metadata: 37198
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37198 | SRR1010321 | SRX363360 | SRS490033 | SRP030770 | PRJNA222234 | Danio rerio Targeted Locus Loci | PRJNA222234 | Transcriptome Analysis | Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter which guide transcription start site selection for that promoter in the zebrafish oocyte. | pubmed:24531765 | stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry | Generic sample from Danio rerio | D. rerio WTL1F transgenic line | strain:AB strain WTL1F line|dev stage:high 3.3 hpf | D. rerio WTL1F transgenic line single locus CAGE endogenous sf3a2 | D. rerio WTL1F transgenic line single locus CAGE endogeneous sf3a2 | 1 | 1 | OTHER | TRANSCRIPTOMIC | CAGE | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP030770 | WTL1F_endogenous_R1.fastq WTL1F_endogenous_R2.fastq | fastq fastq | 64955082.0 | 941378.0 | D. rerio WTL1F transgenic line single locus CAGE endogeneous sf3a2 | 0:34 1:35 | A:17404375;C:16997013;G:18318738;T:12210960;N:23996 | 34 | 35 | 17404375 | 16997013 | 18318738 | 12210960 | 23996 | SRX363360 | SRS490033 | SRA104816 | University of Bergen | ZEPROME consortium | 2 | 0.55528 | 0.02138 | 9e-05 | 0.00135 | 0.99963 | 0.99991 | 9e-05 | 0.10169 | 34 | 35 | B | T | mate2 technical by mapping diff | illumina | hiseq_era | unknown | cage | unknown | bulk | unknown | unknown | Unknown | 2014-02-10 | Blastula | Embryo | Undetermined | Embryo Imprecise |