run_metadata: 36613
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36613 | SRR633542 | SRX210633 | SRS379600 | SRP017563 | PRJNA183864 | Zebrafish larvae exposed to cold or hypoxia stress | PRJNA183864 | Other | To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform. | 1 | zebrafish larvae maintained at control condition replicate 3 | ck3 | dataset for sample ck3 | Seq3 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina Genome Analyzer IIx | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP017563 | 712122912.0 | 9890596.0 | ck3 run1 | 0:36 1:36 | A:173202209;C:178330394;G:181430842;T:178980355;N:179112 | 36 | 36 | 173202209 | 178330394 | 181430842 | 178980355 | 179112 | SRX210633 | SRS379600 | SRA062881 | Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.93432 | 0.92622 | 0.07444 | 0.07347 | 0.66267 | 0.66381 | 0.45819 | 0.45458 | 36 | 36 | B | B | biological fallback assumption | illumina | early_illumina | unknown | other | unknown | bulk | unknown | unknown | China | 2012-12-17 | Larval | Larval | Undetermined | Undetermined |