run_metadata: 36604
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36604 | SRR633553 | SRX210638 | SRS379605 | SRP017563 | PRJNA183864 | Zebrafish larvae exposed to cold or hypoxia stress | PRJNA183864 | Other | To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses larvae at xxxhpf were exposed to cold stress 16 Celsius degree or hypoxia 5% O2 for 24h and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. post environmental exposure RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform. | 1 | zebrafish larvae exposed to hypoxia stress replicate 2 | hypo2 | dataset for sample hypo2 | Seq8 | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina Genome Analyzer IIx | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>37</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP017563 | hypo2_run2_R2.fastq.gz | fastq | 988361568.0 | 13727244.0 | hypo2 run2 | 0:36 1:36 | A:240212534;C:248205313;G:250004116;T:248599375;N:1340230 | 36 | 36 | 240212534 | 248205313 | 250004116 | 248599375 | 1340230 | SRX210638 | SRS379605 | SRA062881 | Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.94029 | 0.93226 | 0.07174 | 0.0704 | 0.67129 | 0.67142 | 0.44913 | 0.45448 | 36 | 36 | B | B | biological fallback assumption | illumina | early_illumina | unknown | other | unknown | bulk | unknown | unknown | China | 2013-12-13 | Larval | Larval | Undetermined | Undetermined |