run_metadata: 36581
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36581 | SRR594769 | SRX195432 | SRS369361 | SRP016134 | PRJNA177654 | Danio rerio Transcriptome or Gene expression | PRJNA177654 | Other | We use zebrafish embryos to characterise the transcriptome of the developing blood and endothelium. | 1 | Test | GFP Negative 1 | Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development | Embryos | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | unspecified | SINGLE | ILLUMINA | Illumina Genome Analyzer IIx | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>40</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP016134 | 2525199228.0 | 65962848.0 | GFP Positive | 0:38.28 | A:665802914;C:594493287;G:612298433;T:652078696;N:525898 | 38 | 665802914 | 594493287 | 612298433 | 652078696 | 525898 | SRX195432 | SRS369361 | University of Cambridge | 1 | 0.89062 | 0.09595 | 0.74059 | 0.47506 | 36 | B | usable mapping rate | illumina | early_illumina | unknown | unknown | unknown | bulk | unknown | unknown | United Kingdom | 2015-07-22 | Undetermined | Embryo | Embryo Imprecise | All anatomical structures |