run_metadata: 36223
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36223 | SRR33596639 | SRX28826240 | SRS25059183 | SRP585802 | PRJNA1263632 | transcriptome analysis of cu693494.2 ORF3 mutant | PRJNA1263632 | Other | The 3 dpf cu693494.2 ORF3 / and WT larvae were dark treated 1day and the zebrafish samples were collected at CT4/100 hpf each with duplicate samples. | cu ORF3 CT4 2 | strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 30|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: whole body | treatment2 | treatment2 | RNA | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP585802 | cu-orf3-ct4-2_L1_1.fq.gz cu-orf3-ct4-2_L1_2.fq.gz | fastq fastq | 6171131100.0 | 20570437.0 | cu orf3 ct4 2 L1 1.fq.gz | 0:150 1:150 | A:1712348536;C:1373082573;G:1411350014;T:1674292589;N:57388 | 150 | 150 | 1712348536 | 1373082573 | 1411350014 | 1674292589 | 57388 | SRX28826240 | SRS25059183 | SRA2130944 | Soochow University|Center for Circadian Clocks | Soochow University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2025-05-16 | Larval | Larval | Trunk | Surface Structure |