run_metadata: 36200
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36200 | SRR33473362 | SRX28708818 | SRS24974884 | SRP583878 | PRJNA1260177 | Danio rerio strain:AB Raw sequence reads | PRJNA1260177 | Whole Genome Sequencing | Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure | PFBA63 1 | strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA1 for 63 days|BioSampleModel:Model organism or animal | RNAseq of zebrafish | PFBA63 1 | PFBA63 1 | Normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP583878 | 63-L-1000-1_1.fq.gz 63-L-1000-1_2.fq.gz | fastq fastq | 7151526600.0 | 23838422.0 | 63 L 1000 1 1.fq.gz | 0:150 1:150 | A:1976607137;C:1609741742;G:1611433703;T:1953622914;N:121104 | 150 | 150 | 1976607137 | 1609741742 | 1611433703 | 1953622914 | 121104 | SRX28708818 | SRS24974884 | SRA2125834 | Ningbo University|College of marine science | Ningbo University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-05-08 | Adult | Adult | Liver | Liver and Biliary System |