run_metadata: 36050
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36050 | SRR33405574 | SRX28646804 | SRS24917413 | SRP582714 | PRJNA1257950 | Zebrafish Timothy syndrome knock in model | PRJNA1257950 | Other | Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome. | mut3 d2 | strain:ABC|age:2 dpf|collection date:2024 06|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 2 dpf replicate 3|BioSampleModel:Model organism or animal | RNA Seq of zebrafish TS2 mutant | mut3 d2 | mut3 d2 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582714 | y680_mut-3_S7_R1_001.fastq.gz y680_mut-3_S7_R2_001.fastq.gz | fastq fastq | 12769594212.0 | 63754551.0 | y680 mut 3 S7 R1 001.fastq.gz | 0:100.17 1:100.12 | A:3270488183;C:3128646350;G:3212521095;T:3156861188;N:1077396 | 100 | 100 | 3270488183 | 3128646350 | 3212521095 | 3156861188 | 1077396 | SRX28646804 | SRS24917413 | SRA2122396 | NICHD|DDB | NICHD | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | United States | 2025-05-01 | Hatching | Embryo | Undetermined | Embryo Imprecise |