run_metadata: 3605
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3605 | ERR1891631 | ERX1952129 | ERS1447328 | ERP013837 | PRJEB12366 | Overexpression of prl3 in zebrafish embryos | Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings | ArrayExpress:E ERAD 455 | zmp ph269 B11 | SAMEA4548149 | Wellcome Sanger Institute | ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548149|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:22Z|INSDC status:public|Submitter Id:10336b00 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10336b00 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed | Illumina HiSeq 2000 paired end sequencing | SC EXP 21524 4#2 | 18163312 | Illumina sequencing of library 18163312 constructed from sample accession ERS1447328 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence CGATGTTT. | RNA seq dUTP eukaryotic | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP013837 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 | 21524_4#2.cram | cram | 1016125650.0 | 6774171.0 | SC RUN 21524 4#2 | 0:75 1:75 | A:265811040;C:240817986;G:239885127;T:269117251;N:494246 | 75 | 75 | 265811040 | 240817986 | 239885127 | 269117251 | 494246 | ERX1952129 | ERS1447328 | ERA854063 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.958 | 0.96017 | 0.22651 | 0.22405 | 0.7167 | 0.71946 | 0.51897 | 0.52975 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-11-15 | Pharyngula | Embryo | Whole Organism | All anatomical structures |