run_metadata: 36048
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36048 | SRR33405572 | SRX28646806 | SRS24917415 | SRP582714 | PRJNA1257950 | Zebrafish Timothy syndrome knock in model | PRJNA1257950 | Other | Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome. | wt1 d6 | strain:ABC|age:6 dpf|collection date:2023 11|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:WT|replicate:wt 6 dpf replicate 1|BioSampleModel:Model organism or animal | RNA Seq of zebrafish TS2 mutant | wt1 d6 | wt1 d6 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582714 | cacna1c_WT_1_S7_R1_001.fastq.gz cacna1c_WT_1_S7_R2_001.fastq.gz | fastq fastq | 9293528237.0 | 46558667.0 | cacna1c WT 1 S7 R1 001.fastq.gz | 0:99.79 1:99.82 | A:2430900099;C:2210330384;G:2204776815;T:2445836511;N:1684428 | 99 | 99 | 2430900099 | 2210330384 | 2204776815 | 2445836511 | 1684428 | SRX28646806 | SRS24917415 | SRA2122396 | NICHD|DDB | NICHD | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | United States | 2025-05-01 | Larval | Larval | Undetermined | Undetermined |