run_metadata: 36045
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36045 | SRR33405569 | SRX28646809 | SRS24917418 | SRP582714 | PRJNA1257950 | Zebrafish Timothy syndrome knock in model | PRJNA1257950 | Other | Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome. | het1 d6 | strain:ABC|age:6 dpf|collection date:2023 11|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 6 dpf replicate 1|BioSampleModel:Model organism or animal | RNA Seq of zebrafish TS2 mutant | het1 d6 | het1 d6 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582714 | cacna1c_het_1_S1_R1_001.fastq.gz cacna1c_het_1_S1_R2_001.fastq.gz | fastq fastq | 11684421424.0 | 58481596.0 | cacna1c het 1 S1 R1 001.fastq.gz | 0:99.90 1:99.89 | A:3045294891;C:2793948277;G:2758390754;T:3085023344;N:1764158 | 99 | 99 | 3045294891 | 2793948277 | 2758390754 | 3085023344 | 1764158 | SRX28646809 | SRS24917418 | SRA2122396 | NICHD|DDB | NICHD | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | United States | 2025-05-01 | Larval | Larval | Undetermined | Undetermined |