run_metadata: 36043
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36043 | SRR33405567 | SRX28646811 | SRS24917420 | SRP582714 | PRJNA1257950 | Zebrafish Timothy syndrome knock in model | PRJNA1257950 | Other | Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome. | het3 d6 | strain:ABC|age:6 dpf|collection date:2023 11|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:het|replicate:het 6 dpf replicate 3|BioSampleModel:Model organism or animal | RNA Seq of zebrafish TS2 mutant | het3 d6 | het3 d6 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582714 | cacna1c_het_3_S3_R1_001.fastq.gz cacna1c_het_3_S3_R2_001.fastq.gz | fastq fastq | 11351674291.0 | 56743676.0 | cacna1c het 3 S3 R1 001.fastq.gz | 0:100.02 1:100.03 | A:2962013830;C:2707561654;G:2677851652;T:3002283466;N:1963689 | 100 | 100 | 2962013830 | 2707561654 | 2677851652 | 3002283466 | 1963689 | SRX28646811 | SRS24917420 | SRA2122396 | NICHD|DDB | NICHD | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | United States | 2025-05-01 | Larval | Larval | Undetermined | Undetermined |