run_metadata: 36039
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36039 | SRR33405563 | SRX28646815 | SRS24917424 | SRP582714 | PRJNA1257950 | Zebrafish Timothy syndrome knock in model | PRJNA1257950 | Other | Characterization of transcriptomic changes in anterior tissue of zebrafish larvae with mutation in cacna1c to model Timothy sundrome. | mut3 d6 | strain:ABC|age:6 dpf|collection date:2023 11|geo loc name:USA: Maryland Bethesda|sex:n/a|tissue:Anterior to swimbladder|genotype:mut|replicate:mut 6 dpf replicate 3|BioSampleModel:Model organism or animal | RNA Seq of zebrafish TS2 mutant | mut3 d6 | mut3 d6 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582714 | cacna1c_mut_3_S6_R1_001.fastq.gz cacna1c_mut_3_S6_R2_001.fastq.gz | fastq fastq | 10821244875.0 | 54211675.0 | cacna1c mut 3 S6 R1 001.fastq.gz | 0:99.80 1:99.81 | A:2844936671;C:2560986718;G:2541107233;T:2872530750;N:1683503 | 99 | 99 | 2844936671 | 2560986718 | 2541107233 | 2872530750 | 1683503 | SRX28646815 | SRS24917424 | SRA2122396 | NICHD|DDB | NICHD | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | unknown | unknown | United States | 2025-05-01 | Larval | Larval | Undetermined | Undetermined |