run_metadata: 36011
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36011 | SRR33398630 | SRX28641171 | SRS24911528 | SRP582620 | PRJNA1256937 | Transcriptome data of zebrafish | PRJNA1256937 | Other | Zebrafish larvae were treated with carbimazole until 120 hpf aiming to explore the specific mechanisms by which the drug exerts toxicity on zebrafish | not collected | WT 2 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:120hpf|dev stage:120hpf|collection date:2024 12 17|geo loc name:China: Fujian Fuzhou|sex:not determined|tissue:Fry|biomaterial provider:Fuzhou University School of Biological Science and Engineering Institute of Life Sciences Room 208|cell line:not collected|cell type:not collected|collected by:not collected|culture collection:not collected|disease:not collected|disease stg:not collected|genotype:not collected|health state:not collected|isolation source:not collected|lat lon:not collected|phenotype:not collected|sample type:not collected|specimen voucher:not collected|store cond:not collected|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | WT2 | WT2 | First sample collection and processing the samples are from 5 dpf juvenile fish. Second conduct RNA extraction and quality detection. Then construct the library and perform sequencing on the machine. Finally carry out data analysis. | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582620 | WT-2_merge.R1.fastq.gz WT-2_merge.R2.fastq.gz | fastq fastq | 9350997600.0 | 31169992.0 | WT 2 merge.R1.fastq.gz | 0:150 1:150 | A:2531840914;C:2136380344;G:2177743101;T:2504682606;N:350635 | 150 | 150 | 2531840914 | 2136380344 | 2177743101 | 2504682606 | 350635 | SRX28641171 | SRS24911528 | SRA2121261 | Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20|Fuzhou University | Fuzhou University, School of Biological Science and Engineering, Institute of Life Sciences, Room 20 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-05-01 | Larval | Larval | Cell Line | Cell Line |