run_metadata: 35974
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35974 | SRR33391361 | SRX28634180 | SRS24905108 | SRP582507 | PRJNA1256627 | Danio rerio Raw sequence reads | PRJNA1256627 | Whole Genome Sequencing | Compare the immune related pathways in the gill tissues of Danio rerio in the normal group and the SVCV infected group | CON 3 | strain:not applicable|isolate:not applicable|breed:AB WT|cultivar:not applicable|ecotype:not applicable|age:3 months|dev stage:not applicable|collection date:2025 01 17T08:10:00Z|geo loc name:China:Wuhan|sex:not collected|tissue:gill|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | H113 | H113 | normal RNA seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP582507 | ZB_CON_3_gill.R1.fq ZB_CON_3_gill.R2.fq | fastq fastq | 7019729922.0 | 24395174.0 | ZB CON 3 gill.R1.fq | 0:143.86 1:143.89 | A:1897770435;C:1606322507;G:1616884825;T:1898684128;N:68027 | 143 | 143 | 1897770435 | 1606322507 | 1616884825 | 1898684128 | 68027 | SRX28634180 | SRS24905108 | SRA2121765 | Huazhong Agricultural University|Fisheries College | Huazhong Agricultural University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-04-30 | Adult | Adult | Gill | Respiratory System |