run_metadata: 35798
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35798 | SRR33037158 | SRX28302716 | SRS24645583 | SRP577302 | PRJNA1247234 | Danio rerio Raw sequence reads | PRJNA1247234 | Whole Genome Sequencing | normal RNA sequencing of gonads in Zebrafish Danio rerio | ZM Ctrl 2 | breed:zebrafish|age:adult|collection date:2022 01 05|geo loc name:not collected|sex:male|tissue:gonad|replicate:replicate=biological replicate 8|BioSampleModel:Model organism or animal | RNA seq of zebrafish | zebra8 | zebra8 | normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP577302 | L1EGC150011--ZM_C2.R1.raw.fastq.gz L1EGC150011--ZM_C2.R2.raw.fastq.gz | fastq fastq | 13785416952.0 | 45647076.0 | L1EGC150011 ZM C2.R1.raw.fastq.gz | 0:151 1:151 | A:3612145557;C:3259005821;G:3452125827;T:3462099514;N:40233 | 151 | 151 | 3612145557 | 3259005821 | 3452125827 | 3462099514 | 40233 | SRX28302716 | SRS24645583 | SRA2108762 | South China Normal University|School of environment | South China Normal University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-04-09 | Adult | Adult | Gonad | Reproductive System |