run_metadata: 35507
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35507 | SRR32847799 | SRX28130281 | SRS24485194 | SRP572931 | PRJNA1241724 | Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line | PRJNA1241724 | Other | To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing. | F0 0 2 | strain:AB|age:150 dpf|collection date:2023 03 08|geo loc name:China:Wuhan|sex:female|tissue:ovaries|treatment:Solvent control 0.01% DMSO|replicate:replicate=biological replicate 2|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: adult female ovary | F0 0 2 | F0 0 2 | Solvent control | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP572931 | F0_0_2_1.fq.gz F0_0_2_2.fq.gz | fastq fastq | 6669509400.0 | 22231698.0 | F0 0 2 1.fq.gz | 0:150 1:150 | A:1772820815;C:1570566452;G:1575974746;T:1750118680;N:28707 | 150 | 150 | 1772820815 | 1570566452 | 1575974746 | 1750118680 | 28707 | SRX28130281 | SRS24485194 | SRA2099841 | Xiamen University|School of Life Sciences | Xiamen University | 2 | 0.92506 | 0.92548 | 0.02275 | 0.02262 | 0.76319 | 0.76299 | 0.48685 | 0.48655 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-03-25 | Adult | Adult | Gonad | Reproductive System |