run_metadata: 35423
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35423 | SRR32754076 | SRX28039262 | SRS24399986 | SRP571287 | PRJNA1237738 | Spliceosome components as the main targets of alternative splicing | PRJNA1237738 | Other | Splicing of transcripts via the spliceosome machinery is a complex process involving a multitude of proteins and short non coding RNAs. Mechanisms responsible for non canonical/alternative splicing of genes are poorly understood although numerous processes and diseases have been associated with aberrant mRNA splicing. We have tried to identify the genes most frequently targeted by alternative splicing. Data from several species and types of tissue indicate that the constituents of the spliceosome itself are the main targets of alternative splicing suggesting a model where high splice variant diversity is a fundamental feature of the spliceosome. | S98 | liver5 | isolate:98|dev stage:Adult|sex:missing|tissue:Liver|collection date:missing|geo loc name:Norway|BioSampleModel:Model organism or animal | RNA Seq of zebrafish liver | S98 | S98 | RNA Seq | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP571287 | liver5.R1.fastq.gz liver5.R2.fastq.gz | fastq fastq | 21668259608.0 | 71749204.0 | liver5.R1.fastq.gz | 0:151 1:151 | A:5478219080;C:5141072641;G:5743751757;T:5303745741;N:1470389 | 151 | 151 | 5478219080 | 5141072641 | 5743751757 | 5303745741 | 1470389 | SRX28039262 | SRS24399986 | SRA2095732 | NOFIMA|Department of Breeding and Genetics | NOFIMA | B | B | mate2-mate1 similar by mapping diff | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2025-03-18 | Adult | Adult | Liver | Liver and Biliary System |