run_metadata: 35060
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35060 | SRR32942236 | SRX28216485 | SRS24507277 | SRP573401 | PRJNA1233465 | An Organ wide Spatiotemporal Transcriptomic and Cellular Atlas of the Regenerating Zebrafish Heart | PRJNA1233465 | Other | Adult zebrafish robustly regenerate injured hearts through a complex orchestration of various cell types and a multitude of molecules. Here we utilize single cell RNA sequencing scRNA seq and Stereo seq to construct a spatially resolved cell dataset of regenerating zebrafish hearts across eight time points. | spatial 3D heart | strain:not applicable|dev stage:uninjured|collection date:2021 02|geo loc name:China:Qingdao|sex:not applicable|tissue:heart|isolation source:spatial 3D heart|BioSampleModel:Model organism or animal | Stereo seq of 3D zebrafish heart | DP8400018980BR L01 read.DP8400016191TL F1.part 004 | DP8400018980BR L01 read.DP8400016191TL F1.part 004 | Stereo seq of 3D zebrafish heart | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-T7 | SRP573401 | DP8400018980BR_L01_read.part_004_1.fq.gz DP8400018980BR_L01_read.part_004_2.fq.gz | fastq fastq | 67132205325.0 | 497275595.0 | DP8400018980BR L01 read.part 004 1.fq.gz | 0:35 1:100 | A:16568981023;C:18166652562;G:16840682131;T:15554230958;N:1658651 | 35 | 100 | 16568981023 | 18166652562 | 16840682131 | 15554230958 | 1658651 | SRX28216485 | SRS24507277 | SRA2105098 | BGI Research | BGI Research Institute of Evolution and Marine Biodiversity, Ocean University of China | T | T | mates < 9% mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | sc_generic | single_cell_generic | generic-scrnaseq-only | China | 2025-04-02 | Undetermined | Adult | Heart | Cardiovascular System |