run_metadata: 34922
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34922 | SRR32390774 | SRX27723135 | SRS24115838 | SRP564820 | PRJNA1225415 | Lipid metabolism studies | PRJNA1225415 | Other | Effect of cyp27b1 knockout on gene expression in adipose tissue | WT 3 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month of age|dev stage:Sexual maturity|collection date:2023 06 02|geo loc name:China:Wuhan|sex:female|tissue:Adipose tissue of wild type zebrafish|replicate:replicate=Biological Replicate 3|BioSampleModel:Model organism or animal | RNA Seq of adipose tissue from wild type and cyp27b3 knockout zebrafish | WT 3 | WT 3 | Adipose tissue of zebrafish | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP564820 | L1EHF0502909--WT_3.R1.raw.fastq.gz L1EHF0502909--WT_3.R2.raw.fastq.gz | fastq fastq | 7902932904.0 | 26168652.0 | L1EHF0502909 WT 3.R1.raw.fastq.gz | 0:151 1:151 | A:2042231850;C:1881707768;G:1947999179;T:2025118866;N:5875241 | 151 | 151 | 2042231850 | 1881707768 | 1947999179 | 2025118866 | 5875241 | SRX27723135 | SRS24115838 | SRA2079844 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2025-02-18 | Adult | Adult | Adipose Tissue | Adipose Tissue |