run_metadata: 34594
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34594 | SRR32128858 | SRX27475160 | SRS23899210 | SRP559934 | PRJNA1215774 | 3 mpf dark reared zebrafish eye RNA sequencing | PRJNA1215774 | Other | Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed. | lighttreated3 | strain:not applicable|isolate:Sun Yat sen University|breed:not applicable9|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable9|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish9|isolation source:zebrafish9|BioSampleModel:Model organism or animal | sample info | library 9 | library 9 | DNA barcode9 | WXS | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP559934 | lighttreated3.read1.fastq.gz lighttreated3.read2.fastq.gz | fastq fastq | 7919383200.0 | 26397944.0 | lighttreated3.read1.fastq.gz | 0:150 1:150 | A:2135212601;C:1813586654;G:1892878979;T:2077658764;N:46202 | 150 | 150 | 2135212601 | 1813586654 | 1892878979 | 2077658764 | 46202 | SRX27475160 | SRS23899210 | SRA2060897 | zhujiang hospital|ophthalmology | zhujiang hospital | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2025-01-25 | Undetermined | Adult | Undetermined | Undetermined |