run_metadata: 34581
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34581 | SRR32125135 | SRX27471510 | SRS23895968 | SRP559870 | PRJNA1215711 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1215711 | Other | Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP | ASSR1 | strain:not applicable|isolate:Mus musculus19|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal | RNA Seq of mus musculus: adult zebrafish | ASSR1 | ASSR1 | Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP559870 | L1HIK2000605-ASS_1L.R1.raw.fastq.gz L1HIK2000605-ASS_1L.R2.raw.fastq.gz | fastq fastq | 7298160086.0 | 24166093.0 | L1HIK2000605 ASS 1L.R1.raw.fastq.gz | 0:151 1:151 | A:2037516227;C:1601847069;G:1642611261;T:2014718780;N:1466749 | 151 | 151 | 2037516227 | 1601847069 | 1642611261 | 2014718780 | 1466749 | SRX27471510 | SRS23895968 | SRA2060388 | Qingdao University of Science and technology|College of biological engineering | Qingdao University of Science and technology | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2025-01-25 | Adult | Adult | Liver | Liver and Biliary System |