run_metadata: 34569
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34569 | SRR32105514 | SRX27451083 | SRS23877586 | SRP559581 | PRJNA1214993 | Developmental toxicity of new psychoactive substance esketamine to zebrafish | PRJNA1214993 | Other | New psychoactive substance esketamine has developmental toxicity and endocrine disrupting effects on zebrafish. | SC 4 | SC 4 | breed:not applicable|age:14 dpf|collection date:2024 11 15|geo loc name:China: Guangzhou|sex:not applicable|tissue:larva|order:20|BioSampleModel:Model organism or animal | Developmental toxicity of new psychoactive substance esketamine to zebrafish | SC 4 | SC 4 | larva | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP559581 | SC-4.raw_1.fastq.gz SC-4.raw_2.fastq.gz | fastq fastq | 7301556000.0 | 24338520.0 | SC 4.raw 1.fastq.gz | 0:150 1:150 | A:1856926170;C:1789274919;G:1829246096;T:1825603124;N:505691 | 150 | 150 | 1856926170 | 1789274919 | 1829246096 | 1825603124 | 505691 | SRX27451083 | SRS23877586 | SRA2059104 | South China Normal University|School of Environment | South China Normal University | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2025-01-24 | Larval | Larval | Undetermined | Undetermined |