run_metadata: 34418
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34418 | SRR31747824 | SRX27109867 | SRS23567830 | SRP552011 | PRJNA1199330 | Transcriptomic analysis of zebrafish liver | PRJNA1199330 | Other | The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1. | COM4 | strain:not collected|isolate:liver COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal | transcriptomic sequencing | LRA172640 | LRA172640 | The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP552011 | COM4_R1.fastq.gz COM4_R2.fastq.gz | fastq fastq | 7633749130.0 | 25277315.0 | COM4 R1.fastq.gz | 0:151 1:151 | A:2223410712;C:1603699864;G:1630586500;T:2175879626;N:172428 | 151 | 151 | 2223410712 | 1603699864 | 1630586500 | 2175879626 | 172428 | SRX27109867 | SRS23567830 | SRA2036115 | shandong university|School of Public Health | shandong university | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-12-17 | Adult | Adult | Liver | Liver and Biliary System |