run_metadata: 344
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344 | ERR1858135 | ERX1919818 | ERS1375993 | ERP011556 | PRJEB10320 | Transcriptome profiling of zebrafish embryos from the SAT Sanger AB T bingen strain | Transcriptome_profiling_of_zebrafish_embryos_from_the_SAT__Sanger_AB_T_bingen__strain-sc-3780 | Transcriptome Analysis | RNAseq data was generated from zebrafish embryos from the SAT Sanger AB Tübingen strain for transcriptomic profiling | ArrayExpress:E ERAD 421 | zmp phenotype 209 G11 | SAMEA4476814 | Wellcome Sanger Institute | ArrayExpress DevelopmentalStage:Larval:Day 5 ZFS:0000037|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 02 28|ENA last update:2016 10 04|External Id:SAMEA4476814|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 02 28T16:13:33Z|INSDC last update:2016 10 04T09:56:02Z|INSDC status:public|Submitter Id:6b8db070 8947 11e6 85f5 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish embryo from the SAT Sanger AB T?bingen strain collected at 5dpf plus ERCC spike mix 1 Ambion.|sample name:6b8db070 8947 11e6 85f5 3c4a9275d6c8|strain:Sanger AB T?bingen | Illumina HiSeq 2500 paired end sequencing | SC EXP 21364 2#87 | DN467330K:G11 | Illumina sequencing of library DN467330K:G11 constructed from sample accession ERS1375993 for study accession ERP011556. This is part of an Illumina multiplexed sequencing run 21364 2. This submission includes reads tagged with the sequence GGATTAGG. | RNA seq dUTP eukaryotic | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP011556 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2017 02 28|ENA LAST UPDATE:2018 11 16 | 21364_2#87.cram | cram | 435613200.0 | 2904088.0 | SC RUN 21364 2#87 | 0:75 1:75 | A:117690247;C:98976715;G:98642356;T:120153289;N:150593 | 75 | 75 | 117690247 | 98976715 | 98642356 | 120153289 | 150593 | ERX1919818 | ERS1375993 | ERA828465 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.96127 | 0.9641 | 0.19301 | 0.18681 | 0.67489 | 0.67734 | 0.49028 | 0.48989 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-10-04 | Larval | Larval | Whole Organism | All anatomical structures |