run_metadata: 34348
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34348 | SRR31677716 | SRX27040107 | SRS23503216 | SRP550762 | PRJNA1196411 | Danio rerio Raw sequence reads | PRJNA1196411 | Other | RNA seq of gata6 mutants and siblings | sib3 30hpf | isolate:not collected|dev stage:30hpf|collection date:2024 02 20|geo loc name:China: chongqing|sex:not applicable|tissue:sib3 30hpf whole embryo|BioSampleModel:Model organism or animal | 30hpf sib3 | sample3 | sample3 | 30hpf whole embryo | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP550762 | 30hpf sib3_1.fq.gz 30hpf sib3_2.fq.gz | fastq fastq | 6774228000.0 | 22580760.0 | 30hpf sib3 1.fq.gz | 0:150 1:150 | A:1887196046;C:1525955378;G:1501944328;T:1858775815;N:356433 | 150 | 150 | 1887196046 | 1525955378 | 1501944328 | 1858775815 | 356433 | SRX27040107 | SRS23503216 | SRA2031942 | Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences|Research Center of Stem Cells and Ageing | Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-12-11 | Pharyngula | Embryo | Whole Organism | All anatomical structures |