run_metadata: 34263
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34263 | SRR31595086 | SRX26959910 | SRS23429840 | SRP549196 | PRJNA1193812 | Single cell transcriptome sequencing of zebrafish olfactory epithelium | PRJNA1193812 | Other | We performed single cell sequencing in the olfactory epithelium of wild type zebrafish and zebrafish treated with alarm substances and compared them. | Blank control group | CTR | strain:AB strain|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 year old|dev stage:adult CTR group|collection date:2020 10 10|geo loc name:China: Wuhan|sex:male|tissue:Olfactory epithelium CTR group|BioSampleModel:Model organism or animal | Single cell transcriptome of the AB strain zebrafish olfactory epithelium | CTR OE | CTR OE | sequencing libraries were loaded on an Illumina NextSeq 550AR with paired end kits. Read 1 was used to distinguish different transcripts of different cells. Read 2 was used to determine the genetic information. | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | RANDOM | PAIRED | ILLUMINA | NextSeq 550 | SRP549196 | CTR_S1_L001_R1_001.fastq.gz CTR_S1_L001_R2_001.fastq.gz | fastq fastq | 50773421790.0 | 426667410.0 | CTR S1 L001 R1 001.fastq.gz | 0:28 1:91 | A:14105926130;C:11510784907;G:13135577448;T:12011516484;N:9616821 | 28 | 91 | 14105926130 | 11510784907 | 13135577448 | 12011516484 | 9616821 | SRX26959910 | SRS23429840 | SRA2027027 | Institute of Hydrobiology, Chinese Academy of Sciences|Chinese Academy of Sciences | Institute of Hydrobiology, Chinese Academy of Sciences | T | B | sc-like readlen | illumina | nextseq | unknown | random_priming | unknown | sc | single_cell_generic | generic-scrnaseq-only | China | 2024-12-04 | Adult | Adult | Brain | Nervous System |