run_metadata: 34204
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34204 | SRR31479992 | SRX26848527 | SRS23332373 | SRP547192 | PRJNA1189851 | Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish bone and scale | PRJNA1189851 | Other | PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the bone and scale. | RNA Seq for WT 2B abcc6a8nt / mutant zebrafish b1 at 6 mpf 8 mpf rep2 | WT 2B | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:2023 05 02|geo loc name:not applicable|sex:male and female|tissue:B1|BioSampleModel:Model organism or animal | RNA Seq for WT 2B | WT 2B | WT 2B | RNA Seq for abcc6a8nt / mutant zebrafish hearts at 6 mpf 8 mpf rep2 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP547192 | L1EHF0600989--WT_2B.R1.raw.fastq.gz L1EHF0600989--WT_2B.R2.raw.fastq.gz | fastq fastq | 7647939204.0 | 25324302.0 | L1EHF0600989 WT 2B.R1.raw.fastq.gz | 0:151 1:151 | A:1987849331;C:1831909030;G:1863287600;T:1964873314;N:19929 | 151 | 151 | 1987849331 | 1831909030 | 1863287600 | 1964873314 | 19929 | SRX26848527 | SRS23332373 | Guangdong Cardiovascular Institute | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-11-24 | Adult | Adult | Heart | Cardiovascular System |