run_metadata: 34192
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34192 | SRR31443228 | SRX26812023 | SRS23296672 | SRP546978 | PRJNA1189474 | Bulk RNA Seq of srrm4 homozygous mutant and wild type sibling larvae at 3 dpf | PRJNA1189474 | Other | The goal of this project is to assess the effects of mutations in zebrafish srrm4 on alternative splicing of microexons. Homozygous mutant and homozygous wild type sibling larvae were identified from heterozygous parent crosses Total RNA was isolated for sequencing at 3 dpf | srrm4[y712] mutant replicate 3 | strain:Tpfel long fin|age:3 dpf|collection date:2022 02|geo loc name:USA: Bethesda|sex:not applicable|tissue:head and torso|genotype:homozygous mutant|Replicate:mutant 3|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | srrm4[y712] mutant replicate 3 | srrm4[y712] mutant replicate 3 | TruSeq library | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP546978 | assembly:GRCz11 | 25938_mut3.pass2Aligned.sortedByCoord.out.bam | bam | 23466336192.0 | 117587529.0 | 25938 mut3.pass2Aligned.sortedByCoord.out.bam | 0:100.13 1:100.08 | A:6298034402;C:5433884683;G:5344985734;T:6388443446;N:987927 | 100 | 100 | 6298034402 | 5433884683 | 5344985734 | 6388443446 | 987927 | SRX26812023 | SRS23296672 | SRA2019780 | Eunice Kennedy Shriver National Institute of Child Health and Human Development|Division of Developmental Biology | Eunice Kennedy Shriver National Institute of Child Health and Human Development | 2 | 0.95864 | 0.95894 | 0.10681 | 0.1052 | 0.65385 | 0.65403 | 0.46511 | 0.46252 | 99 | 101 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | bulk | bulk | United States | 2024-11-22 | Larval | Larval | Head | Nervous System |