run_metadata: 33963
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33963 | SRR31021727 | SRX26408824 | SRS22928737 | SRP539040 | PRJNA1173915 | Revealing hidden plastics using Trinal Oviparous Omics Model TriOOL | PRJNA1173915 | Other | This project builds on strong interdisciplinary technologies and international expertise to explore frontiers of nanoplastic pollution issues by integrating comparative model embryos cutting edge bioimaging omics and hazard modelLing. The project will provide unprecedented insights into understanding the potential hazards posed by nanoplastics and corresponding mechanisms and launch a new chapter in the toxicological assessment of nanopollutant mixtures. | NH2 0.1 2 | N120 WLO 2 | strain:Wide AB|isolate:Wide type AB strain|breed:live Artemia and dry flake food|cultivar:missing|ecotype:Denmark|age:120 hpf|dev stage:larvae|collection date:2022 04|geo loc name:Denmark: Odense|sex:pooled male and female|tissue:whole organism|source material id:B351|BioSampleModel:Model organism or animal | RNA Seq of zebrafish: B351 | B351 | B351 | RNA was isolated and purified by the RNeasy Mini Kit Qiagen Germany with three replicates per group. Total RNA quality was assessed using RNA agarose gel electrophoresis and RNA quantity was determined using a spectrofluorometer MySpec VWR Radnor United States. Complementary DNA cDNA and the generated libraries were prepared according to the manufacture protocol and sequenced using the Illumina NovaSeq 6000sequencing platforms at the University of Southern Denmark. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP539040 | B351_S51_R1_001.fastq.gz B351_S51_R2_001.fastq.gz | fastq fastq | 1506763300.0 | 15067633.0 | B351 S51 R1 001.fastq.gz | 0:50 1:50 | A:388854340;C:361527972;G:367405227;T:388967763;N:7998 | 50 | 50 | 388854340 | 361527972 | 367405227 | 388967763 | 7998 | SRX26408824 | SRS22928737 | SRA1992799 | University of Southern Denmark|Department of Biology | University of Southern Denmark | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | Denmark | 2024-10-17 | Larval | Larval | Whole Organism | All anatomical structures |