run_metadata: 33886
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33886 | SRR30907854 | SRX26311176 | SRS22839346 | SRP537088 | PRJNA1167252 | Eukaryotic transcriptome sequencing of zebrafish | PRJNA1167252 | Other | To study the effects of TDCPP reports on protein expression and RNA transcription in zebrafish | zebrafish | E2 R1 | strain:zebrafish|isolate:missing|breed:AB|cultivar:missing|ecotype:missing|age:48hpf|dev stage:48hpf|collection date:2023 11 30|geo loc name:missing|sex:missing|tissue:missing|tmp:9|BioSampleModel:Model organism or animal | zebrafish | 9 | 9 | Effects of TDCPP exposure on transcription in zebrafish | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina MiSeq | SRP537088 | L1EFA241016_E2.R1.raw.fastq.gz L1EFA241016_E2.R2.raw.fastq.gz | fastq fastq | 8244899282.0 | 27300991.0 | L1EFA241016 E2.R1.raw.fastq.gz | 0:151 1:151 | A:2186915781;C:1920264424;G:1996130250;T:2141502974;N:85853 | 151 | 151 | 2186915781 | 1920264424 | 1996130250 | 2141502974 | 85853 | SRX26311176 | SRS22839346 | SRA1987398 | Beijing Normal University|College of Water Sciences | Beijing Normal University | B | B | biological fallback assumption | illumina | miseq | unknown | other | unknown | bulk | unknown | unknown | China | 2024-10-08 | Hatching | Embryo | Undetermined | Embryo Imprecise |