run_metadata: 33875
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33875 | SRR30814558 | SRX26215067 | SRS22758074 | SRP535175 | PRJNA1165428 | Danio rerio Transcriptome or Gene expression | PRJNA1165428 | Other | RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish. | WT2 | WT2 | strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 06|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal | RNA seq of zebrafish rfc2 wt02 | zf wt 02 | zf wt 02 | Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X | SRP535175 | WT2_1.fastq WT2_2.fastq | fastq fastq | 7406291488.0 | 24524144.0 | WT2 1.fastq | 0:151 1:151 | A:2028130386;C:1659349646;G:1712132015;T:2006666583;N:12858 | 151 | 151 | 2028130386 | 1659349646 | 1712132015 | 2006666583 | 12858 | SRX26215067 | SRS22758074 | SRA1980706 | Chungnam National University|Department of Biology | Chungnam National University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | South Korea | 2024-09-27 | Larval | Larval | Whole Organism | All anatomical structures |