run_metadata: 33872
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33872 | SRR30814555 | SRX26215070 | SRS22758078 | SRP535175 | PRJNA1165428 | Danio rerio Transcriptome or Gene expression | PRJNA1165428 | Other | RNA seq analysis reveals that genes associated with neural cell survival and differentiation are specifically affected in rfc2 KO zebrafish. | KO2 | KO2 | strain:AB|isolate:NA|breed:NA|cultivar:NA|ecotype:NA|age:NA|dev stage:4 dpf|collection date:2024 07 12|geo loc name:South Korea: Daejeon|sex:NA|tissue:Whole Organism|BioSampleModel:Model organism or animal | RNA seq of zebrafish rfc2 ko02 | zf ko 02 | zf ko 02 | Paired end sequencing reads were generated on the Illumina sequencing NovaSeq platform. Cleaned reads were aligned to the Danio rerio GRCz11 using HISAT v2.1.0. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X | SRP535175 | KO2_1.fastq KO2_2.fastq | fastq fastq | 6712882576.0 | 22228088.0 | KO2 1.fastq | 0:151 1:151 | A:1809986030;C:1515597384;G:1598845682;T:1788443120;N:10360 | 151 | 151 | 1809986030 | 1515597384 | 1598845682 | 1788443120 | 10360 | SRX26215070 | SRS22758078 | SRA1980706 | Chungnam National University|Department of Biology | Chungnam National University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | South Korea | 2024-09-27 | Larval | Larval | Whole Organism | All anatomical structures |