run_metadata: 33836
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33836 | SRR30732055 | SRX26134985 | SRS22696874 | SRP533745 | PRJNA1163016 | Pseudoxanthoma elasticum PXE disease model sequencing in zebrafish | PRJNA1163016 | Other | PXE is a rare multisystem disorder caused by mutations in the ABCC6/MRP6 gene associated with adverse clinical outcomes in cardiovascular diseases. However the underlying cardiovascular pathological mechanisms remain elusive. Transcriptomic analysis reveals change in the expression of genes related to the circulatory system and signal transduction. | RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep1 | WT 1 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month 8 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:Ctrl replicate 1|BioSampleModel:Model organism or animal | RNA Seq for WT 1 | WT 1 | WT 1 | RNA Seq for abcc6a+/+ zebrafish hearts at 6 mpf 8 mpf rep1 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP533745 | L1EHF0600984--WT_1H.R1.raw.fastq.gz L1EHF0600984--WT_1H.R2.raw.fastq.gz | fastq fastq | 6277896574.0 | 20787737.0 | L1EHF0600984 WT 1H.R1.raw.fastq.gz | 0:151 1:151 | A:1703988195;C:1423563137;G:1475908891;T:1674419696;N:16655 | 151 | 151 | 1703988195 | 1423563137 | 1475908891 | 1674419696 | 16655 | SRX26134985 | SRS22696874 | Guangdong Cardiovascular Institute | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-09-19 | Adult | Adult | Heart | Cardiovascular System |