run_metadata: 33730
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33730 | SRR30640703 | SRX26062507 | SRS22631691 | SRP532179 | PRJNA1159911 | Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate | PRJNA1159911 | Other | RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf. | WT24hpfcontrol3 | breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol3 embryo|BioSampleModel:Model organism or animal | RNA seq of Wild type zebrafish : 12 embryos in total 2 5mg | WT24hpfcontrol3 R | WT24hpfcontrol3 R | Wild type zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP532179 | WT24hpfcontrol3_R1.clean.fq.gz WT24hpfcontrol3_R2.clean.fq.gz | fastq fastq | 5047867453.0 | 19837417.0 | WT24hpfcontrol3 R1.clean.fq.gz | 0:127.23 1:127.23 | A:1412463929;C:1119657233;G:1121642146;T:1394058438;N:45707 | 127 | 127 | 1412463929 | 1119657233 | 1121642146 | 1394058438 | 45707 | SRX26062507 | SRS22631691 | SRA1970017 | Huazhong Agricultural University, China|Department of Neurosurgery | Huazhong Agricultural University, China | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-09-11 | Multi-stage | Multi-stage | Embryo Imprecise | All anatomical structures |