run_metadata: 33728
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33728 | SRR30640701 | SRX26062509 | SRS22631693 | SRP532179 | PRJNA1159911 | Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate | PRJNA1159911 | Other | RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf. | PCM1KOmutant1 | breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOmutant1 embryo|BioSampleModel:Model organism or animal | RNA seq of pcm1 KO mutant zebrafish : 12 embryos in total 2 3mg | PCM1KOmutant1 R | PCM1KOmutant1 R | KO mutant zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP532179 | PCM1KOmutant1_R1.clean.fq.gz PCM1KOmutant1_R2.clean.fq.gz | fastq fastq | 6040589500.0 | 23826027.0 | PCM1KOmutant1 R1.clean.fq.gz | 0:126.76 1:126.76 | A:1733588631;C:1297359473;G:1301151829;T:1708434373;N:55194 | 126 | 126 | 1733588631 | 1297359473 | 1301151829 | 1708434373 | 55194 | SRX26062509 | SRS22631693 | SRA1970017 | Huazhong Agricultural University, China|Department of Neurosurgery | Huazhong Agricultural University, China | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-09-11 | Multi-stage | Multi-stage | Embryo Imprecise | All anatomical structures |