run_metadata: 33725
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33725 | SRR30640698 | SRX26062512 | SRS22631696 | SRP532179 | PRJNA1159911 | Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate | PRJNA1159911 | Other | RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf. | PCM1MOMutant1 | breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1MOMutant1 embryo|BioSampleModel:Model organism or animal | RNA seq of MO morphants zebrafish : 12 embryos in total 2 3mg | PCM1MOMutant1 R | PCM1MOMutant1 R | MO morphants zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP532179 | PCM1MOMutant1_R1.clean.fq.gz PCM1MOMutant1_R2.clean.fq.gz | fastq fastq | 5701775379.0 | 21587297.0 | PCM1MOMutant1 R1.clean.fq.gz | 0:132.06 1:132.06 | A:1578153876;C:1282130829;G:1284978375;T:1556460380;N:51919 | 132 | 132 | 1578153876 | 1282130829 | 1284978375 | 1556460380 | 51919 | SRX26062512 | SRS22631696 | SRA1970017 | Huazhong Agricultural University, China|Department of Neurosurgery | Huazhong Agricultural University, China | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-09-11 | Multi-stage | Multi-stage | Embryo Imprecise | All anatomical structures |