run_metadata: 33616
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33616 | SRR30272851 | SRX25733948 | SRS22373736 | SRP526812 | PRJNA1148907 | Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio | PRJNA1148907 | Other | The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS | pubmed:39947082 | DMSO S1 | Sample1 | strain:Tgins:GFP zebrafish on an AB wildtype background|age:72 hpf|dev stage:protruding mouth stage|collection date:2023 01 03|geo loc name:USA: Massachusetts|sex:NA|tissue:whole body cells|treatment:DMSO 0.01%|BioSampleModel:Model organism or animal | DMSO | DMSO | DMSO | DMSO S1 scRNAseq | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | PCR | PAIRED | ILLUMINA | NextSeq 500 | SRP526812 | G194-S1-DMSO_S1_L001_R1_001.fastq.gz G194-S1-DMSO_S1_L001_R2_001.fastq.gz G194-S1-DMSO_S1_L002_R1_001.fastq.gz G194-S1-DMSO_S1_L002_R2_001.fastq.gz G194-S1-DMSO_S1_L003_R1_001.fastq.gz G194-S1-DMSO_S1_L003_R2_001.fastq.gz G194-S1-DMSO_S1_L004_R1_001.fastq.gz G194-S1-DMSO_S1_L004_R2_001.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 21636838838.0 | 183363041.0 | G194 S1 DMSO S1 L001 R1 001.fastq.gz | 0:28 1:90 | A:6175214014;C:4647929260;G:5248646646;T:5556827078;N:8221840 | 28 | 90 | 6175214014 | 4647929260 | 5248646646 | 5556827078 | 8221840 | SRX25733948 | SRS22373736 | SRA1949185 | University of Massachusetts Amherst|Environmental Health Sciences | University of Massachusetts Amherst | 2 | 0.01048 | 0.92488 | 0.00455 | 0.20966 | 0.99358 | 0.81464 | 0.28056 | 0.57876 | 28 | 90 | T | B | sc-like readlen | illumina | nextseq | unknown | random_priming | unknown | sc | single_cell_generic | generic-scrnaseq-only | United States | 2024-08-16 | Larval | Larval | Trunk | Surface Structure |