run_metadata: 33615

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
33615	SRR30272850	SRX25733949	SRS22373737	SRP526812	PRJNA1148907	Single cell RNA sequencing to uncover tissue specific transcriptomic changes induced by perfluorooctanesulfonic acid PFOS in larval zebrafish Danio rerio	PRJNA1148907	Other	The aim is to to apply single cell RNA sequencing of zebrafish larvae to identify novel tissue specific mechanisms and processes following embryonic exposure to perfluorooctanesulfonic acid PFOS		pubmed:39947082		PFOS S2	Sample2		strain:Tgins:GFP zebrafish on an AB wildtype background\|age:72 hpf\|dev stage:protruding mouth stage\|collection date:2023 01 03\|geo loc name:USA: Massachusetts\|sex:NA\|tissue:whole body cells\|treatment:PFOS 16 uM\|BioSampleModel:Model organism or animal									PFOS	PFOS	PFOS	PFOS S2 scRNAseq			RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	PCR	PAIRED	ILLUMINA	NextSeq 500		SRP526812			G194-S2-PFOS_S2_L001_R1_001.fastq.gz G194-S2-PFOS_S2_L001_R2_001.fastq.gz G194-S2-PFOS_S2_L002_R1_001.fastq.gz G194-S2-PFOS_S2_L002_R2_001.fastq.gz G194-S2-PFOS_S2_L003_R1_001.fastq.gz G194-S2-PFOS_S2_L003_R2_001.fastq.gz G194-S2-PFOS_S2_L004_R1_001.fastq.gz G194-S2-PFOS_S2_L004_R2_001.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq	21751958340.0	184338630.0	G194 S2 PFOS S2 L001 R1 001.fastq.gz	0:28 1:90	A:6239773453;C:4634671870;G:5196638658;T:5672561386;N:8312973	28	90			6239773453	4634671870	5196638658	5672561386	8312973	SRX25733949	SRS22373737	SRA1949185	University of Massachusetts Amherst\|Environmental Health Sciences	University of Massachusetts Amherst	2	0.01021	0.92344	0.00451	0.22962	0.99328	0.79847	0.28896	0.51751	28	90	T	B	sc-like readlen	illumina	nextseq	unknown	random_priming	unknown	sc	single_cell_generic	generic-scrnaseq-only		United States	2024-08-16	Larval	Larval	Trunk	Surface Structure