run_metadata: 33496
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33496 | SRR30280760 | SRX25741556 | SRS22381074 | SRP527083 | PRJNA1148320 | Danio rerio Raw sequence reads | PRJNA1148320 | Whole Genome Sequencing | Comprehensive zebrafish embryo toxicity analyses of BPA and 16 alternatives. | BPG 8 | BP4# DMSO 1 | strain:TU|isolate:38|dev stage:32hpf|collection date:2023|geo loc name:China|sex:missing|tissue:embryo|BioSampleModel:Model organism or animal | BPG 8 | BP4# DMSO 1 | BP4# DMSO 1 | Ampliseq sequecing | RNA-Seq | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP527083 | BP4#-DMSO-1.fastq.gz | fastq | 207441996.0 | 2016339.0 | BP4# DMSO 1.fastq.gz | 0:102.88 | A:48915341;C:54837085;G:54776415;T:48913155;N:0 | 102 | 48915341 | 54837085 | 54776415 | 48913155 | 0 | SRX25741556 | SRS22381074 | SRA1949064 | Shandong university|School and Hospital of Stomatology | Shandong university | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-08-17 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |