run_metadata: 33376
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33376 | SRR30168928 | SRX25635542 | SRS22279930 | SRP524879 | PRJNA1145574 | RNA sequencing of tail fin of zebrafish | PRJNA1145574 | Other | gene expression change post inhibition of HSP90 | Ax C 3d3 | Z c 3d3 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 3|BioSampleModel:Model organism or animal | tail fin regeneration of zebrafish | Z c 3d3 | Z c 3d3 | cDNA barcode | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP524879 | Z_C_3d3_R2.fastq Z_C_3d3_R1.fastq | fastq fastq | 5810255010.0 | 19239255.0 | Z C 3d3 R1.fastq | 0:151 1:151 | A:1564226440;C:1336263606;G:1355696622;T:1553998418;N:69924 | 151 | 151 | 1564226440 | 1336263606 | 1355696622 | 1553998418 | 69924 | SRX25635542 | SRS22279930 | SRA1942523 | Ocean University of China|Department of marine biology | Ocean University of China | 2 | 0.92958 | 0.92832 | 0.07821 | 0.07745 | 0.70463 | 0.70569 | 0.47036 | 0.47581 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-08-08 | Adult | Adult | Multi-tissue | Multi-system |