run_metadata: 33374
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33374 | SRR30168926 | SRX25635544 | SRS22279933 | SRP524879 | PRJNA1145574 | RNA sequencing of tail fin of zebrafish | PRJNA1145574 | Other | gene expression change post inhibition of HSP90 | Ax Ti 3d2 | Z Hi 3d2 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 2|BioSampleModel:Model organism or animal | tail fin regeneration of zebrafish | Z Hi 3d2 | Z Hi 3d2 | cDNA barcode | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP524879 | Z_Hi_3d2_R1.fastq Z_Hi_3d2_R2.fastq | fastq fastq | 6530683862.0 | 21624781.0 | Z Hi 3d2 R1.fastq | 0:151 1:151 | A:1754695891;C:1502355303;G:1526937743;T:1746614271;N:80654 | 151 | 151 | 1754695891 | 1502355303 | 1526937743 | 1746614271 | 80654 | SRX25635544 | SRS22279933 | SRA1942523 | Ocean University of China|Department of marine biology | Ocean University of China | 2 | 0.93139 | 0.93214 | 0.08116 | 0.08178 | 0.70981 | 0.70983 | 0.48395 | 0.48661 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-08-08 | Adult | Adult | Multi-tissue | Multi-system |