run_metadata: 33350
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33350 | SRR30136585 | SRX25605812 | SRS22254471 | SRP524293 | PRJNA1143173 | Toxic mechanism of the novel pesticide pyrifluquinazon PFQ and its major metabolite in early life stage zebrafish | PRJNA1143173 | Other | To investigate the mechanisms underlying the developmental toxicity of PFQ and dPFQ in zebrafish early life stage RNA seq and transcriptomic analyses were conducted. For the solvent control middle and high concentration groups of PFQ and dPFQ exposure 3 biological replicates were included making 15 samples in total. The sequencing was performed by Novogene Co. Ltd. China. | 14 | 01H2 | strain:WILD|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:larvae|collection date:2022 11 20|geo loc name:China|sex:not determined|tissue:larvae|replicate:dPFQ H replicate biological 2|BioSampleModel:Model organism or animal | RNA seq of daniorerio | 01H2 | 01H2 | Illumina NovaSeq 6000 | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP524293 | 01H2_1.fq.gz 01H2_2.fq.gz | fastq fastq | 6313056900.0 | 21043523.0 | 01H2 1.fq.gz | 0:150 1:150 | A:1766006943;C:1407384164;G:1393123543;T:1746425506;N:116744 | 150 | 150 | 1766006943 | 1407384164 | 1393123543 | 1746425506 | 116744 | SRX25605812 | SRS22254471 | SRA1939705 | Research Center for Eco-Environmental Sciences|University of Chinese Academy of Sciences | Research Center for Eco-Environmental Sciences | 2 | 0.85886 | 0.85703 | 0.20363 | 0.20144 | 0.74044 | 0.74249 | 0.55406 | 0.5549 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-08-05 | Larval | Larval | Undetermined | Undetermined |