run_metadata: 33348
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33348 | SRR30085223 | SRX25558689 | SRS22210797 | SRP523634 | PRJNA1142970 | rna sequncing of POMC miR 7a zebrafish | PRJNA1142970 | Other | Pomc WT | strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:5 mpf date:2017 03|geo loc name:Taiwan|sex:pooled male and female|tissue:Pituitary gland|BioSampleModel:Model organism or animal | RNA Seq of pomc neuron:wild type zebrafish | Pomc WT | Pomc WT | RNA was extracted from pooled zebrafish pomc neron | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiScanSQ | SRP523634 | Pomc_WT_1.fq Pomc_WT_2.fq | fastq fastq | 7525490700.0 | 25084969.0 | Pomc WT 1.fq | 0:150 1:150 | A:2000028813;C:1750437540;G:1771219215;T:2003249941;N:555191 | 150 | 150 | 2000028813 | 1750437540 | 1771219215 | 2003249941 | 555191 | SRX25558689 | SRS22210797 | SRA1937807 | National Yang Ming Chiao Tung University|Institute of Biopharmaceutical Sciences | National Yang Ming Chiao Tung University | B | B | biological fallback assumption | illumina | early_illumina | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Taiwan | 2024-08-01 | Adult | Adult | Pituitary Gland | Endocrine System |