run_metadata: 331

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
331	ERR977579	ERX1054562	ERS805768	ERP011346	PRJEB10140	RNAseq from the pancreatic acinar alpha beta and delta cells from zebrafish	ena-STUDY-GIGA-R, University of Liege-05-08-2015-10:47:24:447-55	Other	We took advantage of zebrafish transgenic tools to isolate by FACS the major pancreatic cell types and obtain pure preparations of endocrine a ß and d cells as well as exocrine acinar and ductal cells.	ENA FIRST PUBLIC:2017 01 31\|ENA LAST UPDATE:2017 01 31		Beta cells from adults purified by FACS	Beta cells R2 2	SAMEA3498619	GIGA-R, University of Liege	ENA first public:2017 01 31\|ENA last update:2015 08 05\|External Id:SAMEA3498619\|INSDC center alias:GIGA R University of Liege\|INSDC center name:GIGA R University of Liege\|INSDC first public:2017 01 31T17:01:11Z\|INSDC last update:2015 08 05T16:56:59Z\|INSDC status:public\|Submitter Id:24\|cell type:Pancreatic Beta cells\|collected by:Estefania Tarifeño Saldivia\|common name:zebrafish\|dev stage:Adult\|isolate:Tgins:GFP\|lab host:ZDDM\|sample name:24									Illumina HiSeq 2000 paired end sequencing	ena EXPERIMENT GIGA R University of Liege 05 08 2015 16:56:42:487 4	Beta R2 2	1	Truseq DNA Sample prep		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2000		ERP011346	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2017 01 31\|ENA LAST UPDATE:2018 11 16	BetaCell2_A026_ATGTCA_L004_R1_001.fastq.gz BetaCell2_A026_ATGTCA_L004_R2_001.fastq.gz	fastq fastq	8532015198.0	42237699.0	ena RUN GIGA R University of Liege 05 08 2015 16:56:42:487 4	0:101 1:101	A:2314776471;C:1823939144;G:1839244845;T:2552984556;N:1070182	101	101			2314776471	1823939144	1839244845	2552984556	1070182	ERX1054562	ERS805768	ERA463595	GIGA-R, University of Liege\|European Nucleotide Archive	GIGA-R, University of Liege	2	0.69844	0.57999	0.09124	0.07501	0.80876	0.82964	0.56023	0.5159	101	101	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	trueseq	bulk	unknown	unknown		Belgium	2015-08-05	Adult	Adult	Pancreas	Endocrine System