run_metadata: 32934
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32934 | SRR29498578 | SRX25008874 | SRS21709093 | SRP515416 | PRJNA1127032 | Zebrafish Tissue Mid Range RNA Sequencing | PRJNA1127032 | Other | This project sequenced mid size ranged RNA from zebrafish liver brain and gut tissues using male and female parallel samples. | F1b | strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:brain|identifier:F1b|BioSampleModel:Model organism or animal | midRNA seq Danio rerio | 01 | 01 | Total RNA was extracted from different zebrafish tissues using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology. | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP515416 | F1b_R2.fq.gz F1b_R1.fq.gz | fastq fastq | 7995852300.0 | 26652841.0 | F1b R1.fq.gz | 0:150 1:150 | A:1744452113;C:2053788787;G:2580416325;T:1617104387;N:90688 | 150 | 150 | 1744452113 | 2053788787 | 2580416325 | 1617104387 | 90688 | SRX25008874 | SRS21709093 | SRA1905460 | Eotvos Lorand University|Genetics | Eotvos Lorand University | 2 | 0.96107 | 0.17798 | 0.16452 | 0.02921 | 0.96759 | 0.99677 | 0.66455 | 0.62672 | 150 | 150 | B | T | mate2 technical by mapping diff | illumina | novaseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Hungary | 2024-06-22 | Adult | Adult | Brain | Nervous System |